BamParam class

BamParam-class

A class describing the parameters of a bam file issued
from an RNA-Seq experiment.

classes

Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.

Nicolas Delhomme

easyRNASeq

Count summarization and normalization for RNA-Seq data

BamParam class function

Objects can be created by calls of the
form <code>new("BamParam", ...)</code> or using the BamParam constructor.

Objects from the Class

The <code><links4class>BamParam</links4class></code> class has
the following slots:
<ul><li>paired</li><li>stranded</li><li>yieldSize</li></ul>
all of which can be accessed using the accordingly names accessor.

BamParam class: Class "BamParam"

Description

Arguments

Objects from the Class

Slots from the Class

See Also

Examples